• Skip to primary navigation
  • Skip to main content
  • Skip to primary sidebar
Mom's Dinner Bell logo
  • Home
  • Recipes
  • Blog
  • My Story
  • Media Kit
  • Contact
menu icon
go to homepage
  • All Recipes
  • My Story
  • Contact

search icon
Homepage link
  • All Recipes
  • My Story
  • Contact

×
Home

Protein Chocolate Chip Muffins

Published: Mar 13, 2025 by Lindsay Lehrer · This post may contain affiliate links · Leave a Comment

Jump to Recipe

Let me tell you why you will love these simple homemade muffins! If you’re looking for a protein-packed, chocolatey snack that doubles as an easy breakfast, these Protein Chocolate Chip Muffins are about to be your new go-to! They’re soft, fluffy, and filled with melty chocolate chips in every bite. I love making a batch of mini muffins (about 2 dozen) for a grab-and-go snack. They’re perfect for tossing in a lunchbox, eating on the way out the door, or pairing with a protein shake when I pick up my kids from practice. These muffins are endlessly customizable—throw in some bananas, nuts, blueberries, or even a swirl of peanut butter to mix things up!

A plate filled with golden brown protein chocolate chip muffins, freshly baked and ready to enjoy.

I used to catch myself buying a dozen donuts for the kids a few times a month for breakfast. The more I thought about it, the more I realized that wasn't the wisest way to start their day. Now, muffins are a staple in my kitchen because they’re easy to make, easy to store, and everyone in the family loves them. But I wanted something a little heartier—something with a boost of protein to keep us full longer. That’s how these protein chocolate chip muffins were born. I started adding protein powder to my basic muffin recipe and found that not only did it increase the nutrition, but it also made the muffins even fluffier. Now, they’re a weekly must-bake in my house!

Are you looking for other protein recipes? Try these fluffy greek yogurt Tic Tac Toe pancakes. Do you want to try something new your kids will love? Try these homemade simple ingredients chicken nuggets.

Jump to:
  • Ingredients
  • Instructions
  • Substitutions
  • Variations
  • Equipment
  • Storage
  • Top Tip
  • FAQ
  • Want to try something new?
  • Are you looking for a quick dinner?

Ingredients

Before we get into the recipe, here’s why each ingredient makes these muffins so good:

A protein chocolate chip muffin split in half, revealing its fluffy interior and gooey melted chocolate chips.
  • Flour – The base that gives the muffins structure. You can swap with oat flour or almond flour for a gluten-free option.
  • Baking Powder & Baking Soda – The magic duo that makes these muffins rise and stay fluffy.
  • Salt – A little bit enhances the flavors and balances the sweetness.
  • Brown Sugar – Adds sweetness and moisture with a hint of molasses.
  • Melted Butter – Gives the muffins richness and keeps them soft.
  • Eggs – Help bind everything together while adding extra protein.
  • Milk – Keeps the batter smooth and adds more moisture.
  • Vanilla Greek Yogurt – A secret weapon for extra protein and a slight tangy flavor.
  • Vanilla Extract – Enhances the overall flavor and makes these muffins smell amazing.
  • Protein Powder – Boosts the protein content, making these muffins more filling. Use your favorite vanilla or chocolate protein powder.
  • Chocolate Chips – Because you can never have too much chocolate! I mix some into the batter and sprinkle extra on top.
  • Coarse Sugar (optional) – Adds a little crunch on top for that bakery-style look.

See recipe card for quantities.

Instructions

Here’s a quick breakdown of how easy these are to make:

A mixing bowl filled with flour, baking powder, protein powder, and brown sugar being whisked together.
  1. Step 1: Mix the dry ingredients – Whisk together the flour, baking powder, baking soda, salt, protein powder, and brown sugar.
A mixing bowl where melted butter, eggs, milk, Greek yogurt, and vanilla are being poured into the dry ingredients.
  1. Step 2: Combine the wet ingredients – In a separate bowl, whisk the melted butter, eggs, milk, Greek yogurt, and vanilla.
A spatula folding chocolate chips into the muffin batter, ensuring even distribution.
  1. Step 3: Bring it all together – Gradually mix the wet ingredients into the dry, then fold in the chocolate chips. into patties
A spoon scooping muffin batter into a lined muffin tin, preparing for baking.
  1. Step 4: Bake – Scoop into muffin tins, top with extra chocolate chips and coarse sugar, then bake until golden brown and set.

Hint: If you love bakery-style muffins with tall, domed tops, try baking at 400°F for the first 5 minutes, then lower the temperature to 350°F for the remaining time. This helps create that signature rise! Totally optional!

Substitutions

You can absolutely modify the recipe to make it gluten free, dairy free or even lower the amount of sugar. It's also nearly impossible to mess this recipe up. You can make it just the way you like it.

  • Make it gluten-free – Use oat flour or almond flour instead of all-purpose flour.
  • Dairy-free option – Swap the butter for coconut oil and use almond milk instead of regular milk.
  • Lower sugar – Use coconut sugar or a sugar substitute instead of brown sugar.

Variations

One of the best things about this recipe is how versatile it is! You can swap ingredients or add fun mix-ins to create your perfect muffin. Here are some ideas:

  • Bananas – Mash one ripe banana into the batter for extra moisture and sweetness.
  • Nuts – Chopped walnuts or pecans add crunch and a boost of healthy fats.
  • Blueberries – Swap some chocolate chips for fresh or frozen blueberries.
  • Peanut Butter – Stir in a swirl of peanut butter for a fun twist.

Equipment

Before you start baking, make sure you have these kitchen essentials ready:

Mixing Bowls – One for dry ingredients and one for wet ingredients.

Kitchen-aid or Whisk  – Helps to evenly incorporate ingredients.

Muffin Tin – Standard or mini, depending on your preference.

Muffin Liners or Nonstick Spray – To prevent sticking.

Measuring Cups & Spoons – For accurate ingredient amounts.

Spatula or Wooden Spoon – For gently mixing the batter.

Toothpick – To check for doneness.

Storage

Making a batch ahead of time? No problem! Here’s how to keep your muffins fresh:

Room Temp – Store in an airtight container for up to 3 days.

Refrigerate – Keep in the fridge for up to a week. Warm them in the microwave for 10–15 seconds before eating.

Freeze – These freeze beautifully! Store in a freezer-safe bag for up to 3 months. Just pop one in the microwave for 20–30 seconds when you need a quick snack.

Top Tip

For extra moist and fluffy muffins, don’t overmix the batter! Stir just until the ingredients are combined—over mixing can make your muffins dense instead of light and tender.

FAQ

Can I use a different protein powder?

Yes! Any protein powder works, but I recommend a vanilla or chocolate-flavored one for the best taste.

Can I make these into mini muffins?

Absolutely

How do I prevent my muffins from being dry?

Make sure not to overmix the batter and measure your flour correctly by spooning it into the cup rather than scooping.

Want to try something new?

Here are a few snack ideas? Try these:

  • Fresh strawberry poppyseed salad with power greens, strawberries, blueberries, pineapple, and pistachios in a large bowl.
    COPYCAT PANERA BREAD STRAWBERRY POPPYSEED SALAD
  • Sliced honey wheat bread loaf with butter ready to spread
    Copycat Cheesecake Factory Honey Wheat Bread
  • A freshly baked Caprese flatbread sliced into pieces, topped with melted mozzarella, juicy tomatoes, fresh basil, and a drizzle of balsamic glaze on a crispy golden crust.
    Caprese Flatbread Recipe
  • A Dutch oven filled with creamy garlic parmesan pasta, freshly cooked and ready to serve.
    Easy Garlic Parmesan Pasta

Are you looking for a quick dinner?

These are a few of my favorites:

  • Breakfast sandwich cut in half on a white plate showing scrambled eggs, spinach, tomato, and cheese inside a bagel
    Easy Egg Scramble Bagel Sandwich
  • A chilled glass of homemade Orange Julius with a straw and a fresh orange slice.
    Copycat Orange Julius Recipe
  • Close-up showing the inside layers of tortilla, beef patty, melted cheese, and pico de gallo.
    Quesadilla Burger Recipe
  • late of chicken nuggets and French fries with Chick-fil-A sauce and metal cooling rack in the background
    Copycat Chick-fil-A Nugget Sauce

A plate of freshly baked protein chocolate chip muffins with golden tops and melted chocolate chips.
Print Pin

Protein Chocolate Chip Muffins

These protein-packed chocolate chip muffins are soft, fluffy, and perfect for an on-the-go breakfast or snack. Packed with Greek yogurt, protein powder, and chocolate chips, they’re a family favorite!
Course Appetizer, Breakfast, Snack
Cuisine American, Quick & Easy
Keyword greek yogurt muffins, healthy chocolate chip muffins, high protein muffins, protein chocolate chip muffins, protein powder muffins
Prep Time 10 minutes minutes
Cook Time 20 minutes minutes
Total Time 29 minutes minutes
Servings 12 Muffins
Calories 220kcal
Cost $5

Equipment

  • Mixing Bowls 
  • Kitchen-aid or Whisk 
  • Muffin Tin or Nonstick Spray
  • Measuring Cups & Spoons 
  • Spatula or Wooden Spoon 
  • Toothpick  To check for doneness.

Ingredients

  • 3 cups all-purpose flour You can swap with oat flour or almond flour for a gluten-free option.
  • 1 tablespoon baking powder
  • 1 teaspoon baking soda
  • ½ teaspoon salt
  • ⅓ cup brown sugar
  • 2-3 scoops protein powder Use your favorite vanilla or chocolate protein powder. I use vanilla.
  • ½ cup melted butter
  • 3 eggs
  • ½ cup milk
  • ⅔ cup vanilla Greek yogurt
  • 1 tablespoon vanilla extract
  • 2 cups chocolate chips 1.5 cups for the batter, ½ cup for topping.
  • Coarse sugar optional – Adds a little crunch on top for that bakery-style look.

Instructions

  • Preheat your oven to 350°F (175°C). Line a muffin tin with liners or lightly grease it.
  • In a large bowl, whisk together the flour, baking powder, baking soda, salt, protein powder, and brown sugar.
  • In another bowl, whisk together the melted butter, eggs, milk, Greek yogurt, and vanilla extract.
  • Gradually add the wet ingredients into the dry ingredients, stirring until just combined.
  • Fold in 1.5 cups of chocolate chips.
  • Scoop the batter evenly into the prepared muffin tin, filling each about ¾ full.
  • Sprinkle the remaining ½ cup of chocolate chips and coarse sugar on top.
  • Bake for 18–20 minutes (or 12–14 minutes for mini muffins), until a toothpick inserted in the center comes out clean.
  • Let them cool in the pan for 5 minutes, then transfer to a wire rack to cool completely.

  • Plate of crispy Copycat Chick-fil-A nuggets with French fries and dipping sauce.
    Copycat Chick-fil-A Nuggets
  • A Dutch oven filled with creamy, homemade mac and cheese, with a rich cheese sauce coating every pasta shell.
    Homemade Boxed-Style Mac and Cheese
  • A beautifully plated bowl of Pasta Rosa garnished with fresh basil and Parmesan cheese
    Pasta Rosa Recipe
  • Creamy One Pot Chicken simmering in a Dutch oven with a rich, golden sauce.
    Creamy One Pot Chicken

Reader Interactions

Comments

No Comments

Cancel reply

Your email address will not be published. Required fields are marked *

Recipe Rating




Primary Sidebar

Finding Purpose Through Food and Family

Welcome!

When I'm not spending my evenings driving my kids to all their activities, you can find me snuggling with our rescue pup, Wonder, meal planning, or creating new recipes.

More about me

Copycat Recipes

  • Homemade Strawberry and Raspberry Tru Fru
  • Fresh strawberry poppyseed salad with power greens, strawberries, blueberries, pineapple, and pistachios in a large bowl.
    COPYCAT PANERA BREAD STRAWBERRY POPPYSEED SALAD
  • Sliced honey wheat bread loaf with butter ready to spread
    Copycat Cheesecake Factory Honey Wheat Bread
  • A chilled glass of homemade Orange Julius with a straw and a fresh orange slice.
    Copycat Orange Julius Recipe

Busy Night Recipes

  • Baked Lemon Honey Salmon
    Baked Lemon Honey Salmon
  • Breakfast sandwich cut in half on a white plate showing scrambled eggs, spinach, tomato, and cheese inside a bagel
    Easy Egg Scramble Bagel Sandwich
  • Buttermilk chicken tenders arranged on a teal plate, crispy and golden brown
    Buttermilk Chicken Tenders Recipe (Lightly Fried & Family Favorite
  • Homemade Strawberry and Raspberry Tru Fru
  • Home
  • Recipes
  • Blog
  • My Story
  • Media Kit
  • Contact

Footer

↑ back to top

Resources

  • Privacy Policy

Contact

  • Contact
  • Media Kit

As an Amazon Associate I earn from qualifying purchases.

Copyright © 2025 Foodie Pro on the Feast Plugin